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Röttjers S and Faust K (2021)
Fast and flexible analysis of linked microbiome data with mako
Nature Methods 19, 51-54 (Nature)


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Faust K (2021)
Open challenges for microbial network construction and analysis
The ISME Journal 15, 3111-3118 (ISME)


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Faust K+, Bauchinger F, Laroche B, de Buyl S, Lahti L, Washburne AD, Gonze D, Widder S+ (2018)
Signatures of ecological processes in microbial community time series
Microbiome 6, 120 (BMC)


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D'hoe K*, Vet S*, Faust K*+ et al. (2018)
Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community
eLife 7, e37090 (eLife)


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Gonze D, Lahti L, Raes J, Faust K (2017)
Multi-stability and the origin of microbial community types
The ISME Journal 11, 2159-2166 (The ISME Journal)


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Lima-Mendez G*, Faust K*, Henry N*, et al. (2015)
Determinants of community structure in the global plankton interactome.
Science 348 (6237) (Science)


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Faust K, Raes J (2012)
Microbial interactions: from networks to models.
Nature Review Microbiology 10, 538-550 (2012) (Nature Reviews Microbiology)