Liu B*, Garza DR*, Gonze D, Krzynowek A, Simoens K, Bernaerts K, Geirnaert A and Faust K (2023)
Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis
The ISME journal 17, 1940-1952 (ISME)
Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis
The ISME journal 17, 1940-1952 (ISME)
van de Velde CC, Joseph C, Biclot A, Huys GRB, Pinheiro VB, Bernaerts K, Raes R and Faust K (2022)
Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification
ISME Communications 2, 40 (ISME Comm)
Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification
ISME Communications 2, 40 (ISME Comm)
Röttjers S and Faust K (2021)
Fast and flexible analysis of linked microbiome data with mako
Nature Methods 19, 51-54 (Nature)
Fast and flexible analysis of linked microbiome data with mako
Nature Methods 19, 51-54 (Nature)
Faust K (2021)
Open challenges for microbial network construction and analysis
The ISME Journal 15, 3111-3118 (ISME)
Open challenges for microbial network construction and analysis
The ISME Journal 15, 3111-3118 (ISME)
Faust K+, Bauchinger F, Laroche B, de Buyl S, Lahti L, Washburne AD, Gonze D, Widder S+ (2018)
Signatures of ecological processes in microbial community time series
Microbiome 6, 120 (BMC)
Signatures of ecological processes in microbial community time series
Microbiome 6, 120 (BMC)
D'hoe K*, Vet S*, Faust K*+ et al. (2018)
Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community
eLife 7, e37090 (eLife)
Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community
eLife 7, e37090 (eLife)
Gonze D, Lahti L, Raes J, Faust K (2017)
Multi-stability and the origin of microbial community types
The ISME Journal 11, 2159-2166 (The ISME Journal)
Multi-stability and the origin of microbial community types
The ISME Journal 11, 2159-2166 (The ISME Journal)
Lima-Mendez G*, Faust K*, Henry N*, et al. (2015)
Determinants of community structure in the global plankton interactome.
Science 348 (6237) (Science)
Determinants of community structure in the global plankton interactome.
Science 348 (6237) (Science)
Faust K, Raes J (2012)
Microbial interactions: from networks to models.
Nature Review Microbiology 10, 538-550 (2012) (Nature Reviews Microbiology)
Microbial interactions: from networks to models.
Nature Review Microbiology 10, 538-550 (2012) (Nature Reviews Microbiology)