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TaxonRenormalizer - Class in be.ac.ulb.mlg.utils.renormalizer
This class represents a normalization with taxa.
TaxonRenormalizer() - Constructor for class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizer
Construct a new TaxonRenormalizer without predefined values Default applied renormalization is the default renormalization of the DefaultRenormalizer
TaxonRenormalizerTest - Class in be.ac.ulb.mlg.utils.renormalizer
 
TaxonRenormalizerTest() - Constructor for class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
tearDown() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
tearDown() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testAddFeature() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testBasic() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testCountFeatures() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testCountGroups() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testgetGroupResult() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testGetIndexResult() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testgetNamedResult() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testGroupOf() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testIgnore() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testIgnoreMissing() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testIsHighestLevel() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testIsHighLevel() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testIsLowLevel() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testIsUsingFeatures() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testIsUsingGroups() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testMissing() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testMultipleMeasures() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testNative() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testNative() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testNoFeatures() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testNoGroups() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testNormalize() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testNormalizeInput() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testNormalizeInput() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testNormalizeOutput() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testNormalizeOutput() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testProcessInput() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testProcessInput() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testProcessOutput() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testProcessOutput() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testReset() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testResetNormalizer() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testSetGroups() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testSetGroupsNames() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testSetNormalizer() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testSetNormalizerGroups() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testSetNormalizerSimple() - Method in class be.ac.ulb.mlg.utils.DefaultRenormalizerTest
 
testSetTaxa() - Method in class be.ac.ulb.mlg.utils.renormalizer.TaxonRenormalizerTest
 
testShuffle() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
testThreads() - Method in class be.ac.ulb.mlg.utils.MeasurerTest
 
TestUtils - Class in be.ac.ulb.mlg.utils
 
TestUtils() - Constructor for class be.ac.ulb.mlg.utils.TestUtils
 
TestUtils.DataSize - Enum in be.ac.ulb.mlg.utils
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.BrayCurtis
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.BrownCorrelation
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.entropy.DirichletEntropy
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Entropy
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Euclidean
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Hellinger
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.HilbertSchmidt
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.JensenShannon
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Kendall
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.KullbackLeibler
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.MutualInformation
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Pearson
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Spearman
 
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.Steinhaus
 
transform(double[][]) - Method in interface be.ac.ulb.mlg.utils.Measure
The transformation method called before measurement
transform(double[][]) - Method in class be.ac.ulb.mlg.utils.measure.VarianceOfLogRatios
 

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