References, resources and related tools

References

  1. Agrawal, R., Imielinski, T. & Swami, A. "Mining Association Rules between Sets of Items in Large Databases" in ACM SIGMOD Conference (eds. Buneman, P. & Jajodia, S.) 207-216 (ACM Press, 1993).
  2. Aitchison, J., "A Concise Guide to Compositional Data Analysis" in CDA Workshop Girona (2003).
  3. Brown, M.B., "A Method for Combining Non-Independent, One-Sided Tests of Significance." Biometrics 31, 987-992 (1975).
  4. Costello, E.K. et al. "Bacterial Community Variation in Human Body Habitats Across Space and Time." Science 326, 1694-1697 (2009).
  5. Ellson, J., Gansner, E.R., Koutsofios, E., North, S.C. & Woodhull, G. in GRAPH DRAWING SOFTWARE (Springer-Verlag, 2003).
  6. Faith J.J., et al. "Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles." PLoS Biol, 5:54-66 (2007).
  7. Hu, Z. et al. "VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology." Nucleic Acids Research 37, W115-W121 (2009).
  8. Lallich S., Teytaud O., & Prudhomme E. "Statistical inference and data mining: false discoveries control." 17th Compstat Symposium of the IASC:325-336 (2006).
  9. Legendre, P. & Legendre, L. "Numerical ecology" (Elsevier Science B.V., Amsterdam, 1983).
  10. Margolin, A.A. et al. "ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context." BMC Bioinformatics, 1-15 (2006)
  11. Meyer, P.E., Lafitte, F. & Bontempi, G. "minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information." BMC Bioinformatics, 1-10 (2009)
  12. Meyer P.E., et al. "Information-theoretic inference of large transcriptional regulatory networks." EUROSIP J. Bioinform. Syst. Biol. 79879 (2007).

Resources

Below, resources are listed of which CoNet makes use.

Links to some related tools