# demo settings file to adjust measure thresholds using the BS_FD routine 
# please set correct paths to the demo files!
input==Costello_2009_oral.txt
metadata==Costello_2009_oral_metadata.txt
metadataattribs==bodysite/taxon
# threshold settings
thresholdguessing==edgeNumber
guessingparam==100.0
topbottom==true
# method
ensemblemethods==correl_pearson/correl_spearman/dist_kullbackleibler
multigraph==true
# preprocessing
filterparameter==5.0
stand==col_norm
# missing value handling
nantreatment==pairwise_omit
nantreatmentparam==5
# BS_FD routine
filter==row_minocc/rand
randroutine==lallich
iterations==100
edgethreshold==0.05