# demo settings file to compute a correlation network without intra-family edges
# please set correct paths to the demo files!
input==Costello_2009_oral.txt
metadata==Costello_2009_oral_metadata_with-family-assignments.txt
metadataattribs==bodysite/family/taxon
groupattrib2==family
# preprocessing
filter==row_minocc
filterparameter==5.0
stand==col_norm
# threshold setting
thresholdguessing==edgeNumber
guessingparam==25.0
# measures
ensemblemethods==correl_pearson
multigraph==true
# missing data handling
nantreatment==pairwise_omit
nantreatmentparam==5