# demo settings file to compute a network with spearman and mutual information
# please set correct paths to the demo files!
input==Costello_2009_oral.txt
metadata==Costello_2009_oral_metadata.txt
metadataattribs==bodysite/taxon
# threshold setting
thresholdguessing==edgeNumber
guessingparam==100.0
# preprocessing
filter==row_minocc
filterparameter==5.0
stand==col_norm
resamplemethod==shuffle_rows
# method
ensemblemethods==correl_spearman/sim_mutInfo
multigraph==true
networkmergestrategy==intersection
# MI setting
mi_minet==true
minetdisc==equalfreq
minetmiestimator==mi.shrink
no_rserve==false
# missing value handling
nantreatment==pairwise_omit
nantreatmentparam==5