Experiment identifier	Graph type	RPAIR class filtering	RPAIR weights	Compound weights	Directed	Filtered	Sensitivity	PPV	Geometric accuracy	Organism
58	RPAIR graph	main-trans	unit	degree	TRUE	FALSE	92.3%	93.7%	93.0%	Escherichia coli
82	RPAIR graph	all	RPAIR class-specific	degree	TRUE	FALSE	92.3%	93.7%	93.0%	Escherichia coli
84	RPAIR graph	all	RPAIR class-specific	degree	FALSE	FALSE	92.3%	93.7%	93.0%	Escherichia coli
66	RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	FALSE	92.3%	93.7%	93.0%	Escherichia coli
60	RPAIR graph	main-trans	unit	degree	FALSE	FALSE	92.3%	93.7%	93.0%	Escherichia coli
68	RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	FALSE	92.3%	93.7%	93.0%	Escherichia coli
83	RPAIR graph	all	RPAIR class-specific	degree	FALSE	TRUE	92.1%	93.5%	92.8%	Escherichia coli
57	RPAIR graph	main-trans	unit	degree	TRUE	TRUE	92.1%	93.5%	92.8%	Escherichia coli
59	RPAIR graph	main-trans	unit	degree	FALSE	TRUE	92.1%	93.5%	92.8%	Escherichia coli
81	RPAIR graph	all	RPAIR class-specific	degree	TRUE	TRUE	92.1%	93.5%	92.8%	Escherichia coli
67	RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	TRUE	92.1%	93.5%	92.8%	Escherichia coli
42	RPAIR graph	main	unit	degree	TRUE	FALSE	91.2%	93.8%	92.4%	Escherichia coli
44	RPAIR graph	main	unit	degree	FALSE	FALSE	91.2%	93.8%	92.4%	Escherichia coli
76	RPAIR graph	all	unit	degree	FALSE	FALSE	91.4%	93.1%	92.2%	Escherichia coli
74	RPAIR graph	all	unit	degree	TRUE	FALSE	91.4%	93.1%	92.2%	Escherichia coli
43	RPAIR graph	main	unit	degree	FALSE	TRUE	90.9%	93.5%	92.1%	Escherichia coli
41	RPAIR graph	main	unit	degree	TRUE	TRUE	90.9%	93.5%	92.1%	Escherichia coli
75	RPAIR graph	all	unit	degree	FALSE	TRUE	91.1%	92.9%	91.9%	Escherichia coli
73	RPAIR graph	all	unit	degree	TRUE	TRUE	91.1%	92.9%	91.9%	Escherichia coli
65	RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	TRUE	89.2%	90.9%	90.0%	Escherichia coli
77	RPAIR graph	all	RPAIR class-specific	unit	TRUE	TRUE	92.6%	87.6%	89.6%	Escherichia coli
79	RPAIR graph	all	RPAIR class-specific	unit	FALSE	TRUE	92.6%	87.6%	89.6%	Escherichia coli
52	RPAIR graph	main	RPAIR class-specific	degree	FALSE	FALSE	88.2%	91.0%	89.4%	Escherichia coli
50	RPAIR graph	main	RPAIR class-specific	degree	TRUE	FALSE	88.2%	91.0%	89.4%	Escherichia coli
63	RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	TRUE	92.6%	87.4%	89.4%	Escherichia coli
61	RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	TRUE	92.6%	87.4%	89.4%	Escherichia coli
51	RPAIR graph	main	RPAIR class-specific	degree	FALSE	TRUE	87.7%	90.7%	89.0%	Escherichia coli
49	RPAIR graph	main	RPAIR class-specific	degree	TRUE	TRUE	87.7%	90.7%	89.0%	Escherichia coli
115	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	TRUE	92.0%	83.0%	87.0%	Escherichia coli
113	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	TRUE	91.7%	83.0%	86.8%	Escherichia coli
114	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	FALSE	92.3%	82.3%	86.7%	Escherichia coli
116	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	FALSE	92.3%	82.3%	86.7%	Escherichia coli
99	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	FALSE	TRUE	90.9%	83.5%	86.6%	Escherichia coli
89	reaction-specific RPAIR graph	main	unit	degree	TRUE	TRUE	90.9%	83.5%	86.6%	Escherichia coli
97	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	TRUE	TRUE	90.9%	83.5%	86.6%	Escherichia coli
91	reaction-specific RPAIR graph	main	unit	degree	FALSE	TRUE	90.9%	83.5%	86.6%	Escherichia coli
100	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	FALSE	FALSE	91.2%	82.6%	86.3%	Escherichia coli
92	reaction-specific RPAIR graph	main	unit	degree	FALSE	FALSE	91.2%	82.6%	86.3%	Escherichia coli
90	reaction-specific RPAIR graph	main	unit	degree	TRUE	FALSE	91.2%	82.6%	86.3%	Escherichia coli
98	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	TRUE	FALSE	91.2%	82.6%	86.3%	Escherichia coli
123	reaction-specific RPAIR graph	all	unit	degree	FALSE	TRUE	89.9%	82.6%	85.8%	Escherichia coli
121	reaction-specific RPAIR graph	all	unit	degree	TRUE	TRUE	89.9%	82.6%	85.8%	Escherichia coli
105	reaction-specific RPAIR graph	main-trans	unit	degree	TRUE	TRUE	90.0%	82.3%	85.6%	Escherichia coli
107	reaction-specific RPAIR graph	main-trans	unit	degree	FALSE	TRUE	90.0%	82.3%	85.6%	Escherichia coli
124	reaction-specific RPAIR graph	all	unit	degree	FALSE	FALSE	90.2%	81.9%	85.5%	Escherichia coli
122	reaction-specific RPAIR graph	all	unit	degree	TRUE	FALSE	90.2%	81.9%	85.5%	Escherichia coli
108	reaction-specific RPAIR graph	main-trans	unit	degree	FALSE	FALSE	90.4%	81.6%	85.4%	Escherichia coli
131	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	FALSE	TRUE	88.9%	82.1%	85.0%	Escherichia coli
129	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	TRUE	TRUE	88.9%	82.1%	85.0%	Escherichia coli
132	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	FALSE	FALSE	89.2%	81.4%	84.7%	Escherichia coli
130	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	TRUE	FALSE	89.2%	81.4%	84.7%	Escherichia coli
45	RPAIR graph	main	RPAIR class-specific	unit	TRUE	TRUE	84.7%	85.1%	84.6%	Escherichia coli
47	RPAIR graph	main	RPAIR class-specific	unit	FALSE	TRUE	84.7%	85.1%	84.6%	Escherichia coli
39	RPAIR graph	main	unit	unit	FALSE	TRUE	84.7%	85.1%	84.6%	Escherichia coli
37	RPAIR graph	main	unit	unit	TRUE	TRUE	84.7%	85.1%	84.6%	Escherichia coli
106	reaction-specific RPAIR graph	main-trans	unit	degree	TRUE	FALSE	87.6%	79.7%	83.0%	Escherichia coli
34	ReactionGraph	all	unit	degree	TRUE	FALSE	85.7%	78.0%	81.3%	Escherichia coli
33	ReactionGraph	all	unit	degree	TRUE	TRUE	85.7%	78.0%	81.3%	Escherichia coli
55	RPAIR graph	main-trans	unit	unit	FALSE	TRUE	81.8%	80.8%	81.2%	Escherichia coli
111	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	TRUE	89.6%	75.1%	81.1%	Escherichia coli
109	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	TRUE	89.6%	75.1%	81.1%	Escherichia coli
125	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	TRUE	TRUE	89.6%	75.1%	81.1%	Escherichia coli
127	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	FALSE	TRUE	89.6%	75.1%	81.1%	Escherichia coli
71	RPAIR graph	all	unit	unit	FALSE	TRUE	82.7%	79.6%	80.9%	Escherichia coli
69	RPAIR graph	all	unit	unit	TRUE	TRUE	82.2%	78.9%	80.2%	Escherichia coli
53	RPAIR graph	main-trans	unit	unit	TRUE	TRUE	80.3%	80.3%	80.2%	Escherichia coli
87	reaction-specific RPAIR graph	main	unit	unit	FALSE	TRUE	84.7%	75.7%	79.5%	Escherichia coli
85	reaction-specific RPAIR graph	main	unit	unit	TRUE	TRUE	84.7%	75.7%	79.5%	Escherichia coli
95	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	FALSE	TRUE	84.7%	75.7%	79.5%	Escherichia coli
93	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	TRUE	TRUE	84.7%	75.7%	79.5%	Escherichia coli
36	ReactionGraph	all	unit	degree	FALSE	FALSE	82.6%	76.8%	78.8%	Escherichia coli
35	ReactionGraph	all	unit	degree	FALSE	TRUE	82.6%	76.8%	78.8%	Escherichia coli
78	RPAIR graph	all	RPAIR class-specific	unit	TRUE	FALSE	78.8%	71.5%	74.1%	Escherichia coli
40	RPAIR graph	main	unit	unit	FALSE	FALSE	74.8%	73.9%	74.0%	Escherichia coli
38	RPAIR graph	main	unit	unit	TRUE	FALSE	74.8%	73.9%	74.0%	Escherichia coli
48	RPAIR graph	main	RPAIR class-specific	unit	FALSE	FALSE	74.8%	73.9%	74.0%	Escherichia coli
46	RPAIR graph	main	RPAIR class-specific	unit	TRUE	FALSE	74.8%	73.9%	74.0%	Escherichia coli
80	RPAIR graph	all	RPAIR class-specific	unit	FALSE	FALSE	78.8%	71.4%	74.0%	Escherichia coli
64	RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	FALSE	78.8%	71.1%	73.8%	Escherichia coli
62	RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	FALSE	78.8%	71.1%	73.8%	Escherichia coli
103	reaction-specific RPAIR graph	main-trans	unit	unit	FALSE	TRUE	75.4%	68.5%	71.5%	Escherichia coli
117	reaction-specific RPAIR graph	all	unit	unit	TRUE	TRUE	75.4%	68.5%	71.5%	Escherichia coli
119	reaction-specific RPAIR graph	all	unit	unit	FALSE	TRUE	75.4%	68.5%	71.5%	Escherichia coli
101	reaction-specific RPAIR graph	main-trans	unit	unit	TRUE	TRUE	75.4%	68.5%	71.5%	Escherichia coli
29	ReactionGraph	all	unit	unit	TRUE	TRUE	73.9%	66.1%	69.2%	Escherichia coli
56	RPAIR graph	main-trans	unit	unit	FALSE	FALSE	72.5%	66.9%	68.9%	Escherichia coli
54	RPAIR graph	main-trans	unit	unit	TRUE	FALSE	72.5%	66.9%	68.9%	Escherichia coli
94	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	TRUE	FALSE	74.8%	64.2%	68.3%	Escherichia coli
96	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	FALSE	FALSE	74.8%	64.2%	68.3%	Escherichia coli
88	reaction-specific RPAIR graph	main	unit	unit	FALSE	FALSE	74.8%	64.2%	68.3%	Escherichia coli
86	reaction-specific RPAIR graph	main	unit	unit	TRUE	FALSE	74.8%	64.2%	68.3%	Escherichia coli
72	RPAIR graph	all	unit	unit	FALSE	FALSE	72.6%	65.6%	67.9%	Escherichia coli
70	RPAIR graph	all	unit	unit	TRUE	FALSE	72.2%	65.6%	67.7%	Escherichia coli
31	ReactionGraph	all	unit	unit	FALSE	TRUE	73.0%	63.1%	66.5%	Escherichia coli
112	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	FALSE	77.2%	59.0%	64.6%	Escherichia coli
110	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	FALSE	77.2%	59.0%	64.6%	Escherichia coli
128	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	FALSE	FALSE	77.2%	59.0%	64.6%	Escherichia coli
126	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	TRUE	FALSE	77.2%	59.0%	64.6%	Escherichia coli
102	reaction-specific RPAIR graph	main-trans	unit	unit	TRUE	FALSE	70.4%	59.8%	63.8%	Escherichia coli
104	reaction-specific RPAIR graph	main-trans	unit	unit	FALSE	FALSE	70.4%	59.8%	63.8%	Escherichia coli
118	reaction-specific RPAIR graph	all	unit	unit	TRUE	FALSE	71.3%	58.1%	62.8%	Escherichia coli
120	reaction-specific RPAIR graph	all	unit	unit	FALSE	FALSE	71.3%	58.1%	62.8%	Escherichia coli
30	ReactionGraph	all	unit	unit	TRUE	FALSE	51.8%	9.5%	18.6%	Escherichia coli
32	ReactionGraph	all	unit	unit	FALSE	FALSE	53.1%	8.3%	17.7%	Escherichia coli