Experiment identifier	Graph type	RPAIR class filtering	RPAIR weights	Compound weights	Directed	Filtered	Sensitivity	PPV	Geometric accuracy	Organism
187	RPAIR graph	all	unit	degree	FALSE	TRUE	59.5%	76.4%	65.5%	Saccharomyces cerevisiae
188	RPAIR graph	all	unit	degree	FALSE	FALSE	59.5%	76.4%	65.5%	Saccharomyces cerevisiae
186	RPAIR graph	all	unit	degree	TRUE	FALSE	59.5%	76.4%	65.5%	Saccharomyces cerevisiae
185	RPAIR graph	all	unit	degree	TRUE	TRUE	59.5%	76.4%	65.5%	Saccharomyces cerevisiae
171	RPAIR graph	main-trans	unit	degree	FALSE	TRUE	59.5%	71.9%	63.6%	Saccharomyces cerevisiae
172	RPAIR graph	main-trans	unit	degree	FALSE	FALSE	59.5%	71.9%	63.6%	Saccharomyces cerevisiae
170	RPAIR graph	main-trans	unit	degree	TRUE	FALSE	59.5%	71.9%	63.6%	Saccharomyces cerevisiae
169	RPAIR graph	main-trans	unit	degree	TRUE	TRUE	59.5%	71.9%	63.6%	Saccharomyces cerevisiae
241	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	TRUE	TRUE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
242	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	TRUE	FALSE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
244	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	FALSE	FALSE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
235	reaction-specific RPAIR graph	all	unit	degree	FALSE	TRUE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
236	reaction-specific RPAIR graph	all	unit	degree	FALSE	FALSE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
243	reaction-specific RPAIR graph	all	RPAIR class-specific	degree	FALSE	TRUE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
234	reaction-specific RPAIR graph	all	unit	degree	TRUE	FALSE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
233	reaction-specific RPAIR graph	all	unit	degree	TRUE	TRUE	59.5%	69.5%	62.4%	Saccharomyces cerevisiae
227	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	TRUE	59.5%	68.5%	61.9%	Saccharomyces cerevisiae
226	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	FALSE	59.5%	68.5%	61.9%	Saccharomyces cerevisiae
228	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	FALSE	59.5%	68.5%	61.9%	Saccharomyces cerevisiae
219	reaction-specific RPAIR graph	main-trans	unit	degree	FALSE	TRUE	59.5%	68.5%	61.9%	Saccharomyces cerevisiae
217	reaction-specific RPAIR graph	main-trans	unit	degree	TRUE	TRUE	59.5%	68.5%	61.9%	Saccharomyces cerevisiae
220	reaction-specific RPAIR graph	main-trans	unit	degree	FALSE	FALSE	59.5%	68.5%	61.9%	Saccharomyces cerevisiae
225	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	TRUE	58.8%	68.4%	61.5%	Saccharomyces cerevisiae
161	RPAIR graph	main	RPAIR class-specific	degree	TRUE	TRUE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
164	RPAIR graph	main	RPAIR class-specific	degree	FALSE	FALSE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
153	RPAIR graph	main	unit	degree	TRUE	TRUE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
163	RPAIR graph	main	RPAIR class-specific	degree	FALSE	TRUE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
154	RPAIR graph	main	unit	degree	TRUE	FALSE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
162	RPAIR graph	main	RPAIR class-specific	degree	TRUE	FALSE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
156	RPAIR graph	main	unit	degree	FALSE	FALSE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
155	RPAIR graph	main	unit	degree	FALSE	TRUE	57.1%	65.2%	60.0%	Saccharomyces cerevisiae
194	RPAIR graph	all	RPAIR class-specific	degree	TRUE	FALSE	52.5%	72.7%	59.8%	Saccharomyces cerevisiae
196	RPAIR graph	all	RPAIR class-specific	degree	FALSE	FALSE	52.5%	72.7%	59.8%	Saccharomyces cerevisiae
195	RPAIR graph	all	RPAIR class-specific	degree	FALSE	TRUE	52.5%	72.7%	59.8%	Saccharomyces cerevisiae
193	RPAIR graph	all	RPAIR class-specific	degree	TRUE	TRUE	52.5%	72.7%	59.8%	Saccharomyces cerevisiae
145	ReactionGraph	all	unit	degree	TRUE	TRUE	55.6%	67.5%	59.5%	Saccharomyces cerevisiae
146	ReactionGraph	all	unit	degree	TRUE	FALSE	55.6%	67.5%	59.5%	Saccharomyces cerevisiae
147	ReactionGraph	all	unit	degree	FALSE	TRUE	54.6%	66.4%	58.4%	Saccharomyces cerevisiae
148	ReactionGraph	all	unit	degree	FALSE	FALSE	54.6%	66.4%	58.4%	Saccharomyces cerevisiae
177	RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	TRUE	52.5%	68.2%	57.9%	Saccharomyces cerevisiae
178	RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	FALSE	52.5%	68.2%	57.9%	Saccharomyces cerevisiae
180	RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	FALSE	52.5%	68.2%	57.9%	Saccharomyces cerevisiae
179	RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	TRUE	52.5%	68.2%	57.9%	Saccharomyces cerevisiae
175	RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	TRUE	57.1%	60.2%	57.1%	Saccharomyces cerevisiae
149	RPAIR graph	main	unit	unit	TRUE	TRUE	57.1%	60.2%	57.1%	Saccharomyces cerevisiae
159	RPAIR graph	main	RPAIR class-specific	unit	FALSE	TRUE	57.1%	60.2%	57.1%	Saccharomyces cerevisiae
157	RPAIR graph	main	RPAIR class-specific	unit	TRUE	TRUE	57.1%	60.2%	57.1%	Saccharomyces cerevisiae
173	RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	TRUE	57.1%	60.2%	57.1%	Saccharomyces cerevisiae
151	RPAIR graph	main	unit	unit	FALSE	TRUE	57.1%	60.2%	57.1%	Saccharomyces cerevisiae
189	RPAIR graph	all	RPAIR class-specific	unit	TRUE	TRUE	62.7%	56.4%	56.9%	Saccharomyces cerevisiae
191	RPAIR graph	all	RPAIR class-specific	unit	FALSE	TRUE	62.7%	56.4%	56.9%	Saccharomyces cerevisiae
181	RPAIR graph	all	unit	unit	TRUE	TRUE	52.5%	66.0%	56.8%	Saccharomyces cerevisiae
183	RPAIR graph	all	unit	unit	FALSE	TRUE	52.5%	66.0%	56.8%	Saccharomyces cerevisiae
218	reaction-specific RPAIR graph	main-trans	unit	degree	TRUE	FALSE	52.5%	66.1%	56.8%	Saccharomyces cerevisiae
167	RPAIR graph	main-trans	unit	unit	FALSE	TRUE	55.1%	60.5%	55.4%	Saccharomyces cerevisiae
165	RPAIR graph	main-trans	unit	unit	TRUE	TRUE	55.1%	60.5%	55.4%	Saccharomyces cerevisiae
205	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	TRUE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
199	reaction-specific RPAIR graph	main	unit	unit	FALSE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
207	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	FALSE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
223	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
239	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	FALSE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
221	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
237	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	TRUE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
197	reaction-specific RPAIR graph	main	unit	unit	TRUE	TRUE	57.1%	57.4%	55.4%	Saccharomyces cerevisiae
201	reaction-specific RPAIR graph	main	unit	degree	TRUE	TRUE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
204	reaction-specific RPAIR graph	main	unit	degree	FALSE	FALSE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
203	reaction-specific RPAIR graph	main	unit	degree	FALSE	TRUE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
209	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	TRUE	TRUE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
211	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	FALSE	TRUE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
202	reaction-specific RPAIR graph	main	unit	degree	TRUE	FALSE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
210	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	TRUE	FALSE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
212	reaction-specific RPAIR graph	main	RPAIR class-specific	degree	FALSE	FALSE	55.0%	56.4%	54.9%	Saccharomyces cerevisiae
213	reaction-specific RPAIR graph	main-trans	unit	unit	TRUE	TRUE	55.1%	58.9%	54.4%	Saccharomyces cerevisiae
215	reaction-specific RPAIR graph	main-trans	unit	unit	FALSE	TRUE	55.1%	58.9%	54.4%	Saccharomyces cerevisiae
231	reaction-specific RPAIR graph	all	unit	unit	FALSE	TRUE	52.5%	60.4%	54.3%	Saccharomyces cerevisiae
229	reaction-specific RPAIR graph	all	unit	unit	TRUE	TRUE	52.5%	60.4%	54.3%	Saccharomyces cerevisiae
176	RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	FALSE	48.5%	46.7%	46.9%	Saccharomyces cerevisiae
174	RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	FALSE	48.5%	46.7%	46.9%	Saccharomyces cerevisiae
141	ReactionGraph	all	unit	unit	TRUE	TRUE	45.5%	52.5%	46.7%	Saccharomyces cerevisiae
150	RPAIR graph	main	unit	unit	TRUE	FALSE	48.5%	39.8%	42.9%	Saccharomyces cerevisiae
152	RPAIR graph	main	unit	unit	FALSE	FALSE	48.5%	39.8%	42.9%	Saccharomyces cerevisiae
160	RPAIR graph	main	RPAIR class-specific	unit	FALSE	FALSE	48.5%	39.8%	42.9%	Saccharomyces cerevisiae
158	RPAIR graph	main	RPAIR class-specific	unit	TRUE	FALSE	48.5%	39.8%	42.9%	Saccharomyces cerevisiae
143	ReactionGraph	all	unit	unit	FALSE	TRUE	40.3%	46.8%	42.6%	Saccharomyces cerevisiae
190	RPAIR graph	all	RPAIR class-specific	unit	TRUE	FALSE	48.5%	40.1%	42.4%	Saccharomyces cerevisiae
192	RPAIR graph	all	RPAIR class-specific	unit	FALSE	FALSE	48.5%	40.1%	42.4%	Saccharomyces cerevisiae
224	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	FALSE	48.5%	35.7%	40.8%	Saccharomyces cerevisiae
238	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	TRUE	FALSE	48.5%	35.7%	40.8%	Saccharomyces cerevisiae
222	reaction-specific RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	FALSE	48.5%	35.7%	40.8%	Saccharomyces cerevisiae
240	reaction-specific RPAIR graph	all	RPAIR class-specific	unit	FALSE	FALSE	48.5%	35.7%	40.8%	Saccharomyces cerevisiae
208	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	FALSE	FALSE	48.5%	33.9%	39.5%	Saccharomyces cerevisiae
206	reaction-specific RPAIR graph	main	RPAIR class-specific	unit	TRUE	FALSE	48.5%	33.9%	39.5%	Saccharomyces cerevisiae
198	reaction-specific RPAIR graph	main	unit	unit	TRUE	FALSE	48.5%	33.9%	39.5%	Saccharomyces cerevisiae
200	reaction-specific RPAIR graph	main	unit	unit	FALSE	FALSE	48.5%	33.9%	39.5%	Saccharomyces cerevisiae
168	RPAIR graph	main-trans	unit	unit	FALSE	FALSE	38.7%	41.6%	39.1%	Saccharomyces cerevisiae
166	RPAIR graph	main-trans	unit	unit	TRUE	FALSE	38.7%	41.6%	39.1%	Saccharomyces cerevisiae
184	RPAIR graph	all	unit	unit	FALSE	FALSE	35.8%	43.7%	38.5%	Saccharomyces cerevisiae
182	RPAIR graph	all	unit	unit	TRUE	FALSE	35.8%	43.7%	38.5%	Saccharomyces cerevisiae
216	reaction-specific RPAIR graph	main-trans	unit	unit	FALSE	FALSE	38.7%	37.0%	36.2%	Saccharomyces cerevisiae
214	reaction-specific RPAIR graph	main-trans	unit	unit	TRUE	FALSE	38.7%	37.0%	36.2%	Saccharomyces cerevisiae
230	reaction-specific RPAIR graph	all	unit	unit	TRUE	FALSE	35.8%	37.0%	35.1%	Saccharomyces cerevisiae
232	reaction-specific RPAIR graph	all	unit	unit	FALSE	FALSE	35.8%	37.0%	35.1%	Saccharomyces cerevisiae
144	ReactionGraph	all	unit	unit	FALSE	FALSE	29.7%	12.6%	15.1%	Saccharomyces cerevisiae
142	ReactionGraph	all	unit	unit	TRUE	FALSE	29.0%	12.1%	14.6%	Saccharomyces cerevisiae