Experiment identifier	Graph type	RPAIR class filtering	RPAIR weights	Compound weights	Directed	Filtered	Sensitivity	PPV	Geometric accuracy
58_170_474	RPAIR graph	main-trans	unit	degree	TRUE	FALSE	81.3%	85.0%	82.6%
60_172_476	RPAIR graph	main-trans	unit	degree	FALSE	FALSE	81.3%	85.0%	82.6%
74_186_490	RPAIR graph	all	unit	degree	TRUE	FALSE	80.7%	85.5%	82.5%
76_188_492	RPAIR graph	all	unit	degree	FALSE	FALSE	80.7%	85.5%	82.5%
57_169_473	RPAIR graph	main-trans	unit	degree	TRUE	TRUE	80.9%	84.7%	82.2%
59_171_475	RPAIR graph	main-trans	unit	degree	FALSE	TRUE	80.9%	84.7%	82.2%
73_185_489	RPAIR graph	all	unit	degree	TRUE	TRUE	80.4%	85.3%	82.2%
75_187_491	RPAIR graph	all	unit	degree	FALSE	TRUE	80.4%	85.3%	82.2%
82_194_498	RPAIR graph	all	RPAIR class-specific	degree	TRUE	FALSE	79.9%	85.1%	81.8%
84_196_500	RPAIR graph	all	RPAIR class-specific	degree	FALSE	FALSE	79.9%	85.1%	81.8%
81_193_497	RPAIR graph	all	RPAIR class-specific	degree	TRUE	TRUE	79.5%	84.9%	81.4%
83_195_499	RPAIR graph	all	RPAIR class-specific	degree	FALSE	TRUE	79.5%	84.9%	81.4%
66_178_482	RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	FALSE	79.9%	84.2%	81.4%
68_180_484	RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	FALSE	79.9%	84.2%	81.4%
67_179_483	RPAIR graph	main-trans	RPAIR class-specific	degree	FALSE	TRUE	79.5%	83.9%	81.0%
65_177_481	RPAIR graph	main-trans	RPAIR class-specific	degree	TRUE	TRUE	77.8%	82.4%	79.4%
77_189_493	RPAIR graph	all	RPAIR class-specific	unit	TRUE	TRUE	83.2%	76.3%	78.4%
79_191_495	RPAIR graph	all	RPAIR class-specific	unit	FALSE	TRUE	83.2%	76.3%	78.4%
61_173_477	RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	TRUE	82.0%	77.0%	78.3%
63_175_479	RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	TRUE	82.0%	77.0%	78.3%
43_155_459	RPAIR graph	main	unit	degree	FALSE	TRUE	76.5%	80.1%	77.9%
44_156_460	RPAIR graph	main	unit	degree	FALSE	FALSE	76.1%	79.9%	77.5%
122_234_538	reaction-specific RPAIR  graph	all	unit	degree	TRUE	FALSE	79.6%	75.3%	76.7%
124_236_540	reaction-specific RPAIR  graph	all	unit	degree	FALSE	FALSE	79.6%	75.3%	76.7%
121_233_537	reaction-specific RPAIR  graph	all	unit	degree	TRUE	TRUE	79.2%	75.6%	76.7%
123_235_539	reaction-specific RPAIR  graph	all	unit	degree	FALSE	TRUE	79.2%	75.6%	76.7%
41_153_457	RPAIR graph	main	unit	degree	TRUE	TRUE	75.1%	78.7%	76.5%
130_242_546	reaction-specific RPAIR  graph	all	RPAIR class-specific	degree	TRUE	FALSE	79.0%	75.0%	76.2%
132_244_548	reaction-specific RPAIR  graph	all	RPAIR class-specific	degree	FALSE	FALSE	79.0%	75.0%	76.2%
129_241_545	reaction-specific RPAIR  graph	all	RPAIR class-specific	degree	TRUE	TRUE	78.6%	75.3%	76.2%
131_243_547	reaction-specific RPAIR  graph	all	RPAIR class-specific	degree	FALSE	TRUE	78.6%	75.3%	76.2%
42_154_458	RPAIR graph	main	unit	degree	TRUE	FALSE	74.7%	78.4%	76.2%
114_226_530	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	degree	TRUE	FALSE	79.0%	73.7%	75.5%
116_228_532	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	degree	FALSE	FALSE	79.0%	73.7%	75.5%
115_227_531	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	degree	FALSE	TRUE	78.6%	73.9%	75.5%
113_225_529	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	degree	TRUE	TRUE	78.2%	73.9%	75.3%
49_161_465	RPAIR graph	main	RPAIR class-specific	degree	TRUE	TRUE	73.4%	77.1%	74.8%
51_163_467	RPAIR graph	main	RPAIR class-specific	degree	FALSE	TRUE	73.4%	77.1%	74.8%
108_220_524	reaction-specific RPAIR  graph	main-trans	unit	degree	FALSE	FALSE	77.8%	73.3%	74.7%
105_217_521	reaction-specific RPAIR  graph	main-trans	unit	degree	TRUE	TRUE	77.4%	73.5%	74.6%
107_219_523	reaction-specific RPAIR  graph	main-trans	unit	degree	FALSE	TRUE	77.4%	73.5%	74.6%
50_162_466	RPAIR graph	main	RPAIR class-specific	degree	TRUE	FALSE	73.0%	76.9%	74.5%
52_164_468	RPAIR graph	main	RPAIR class-specific	degree	FALSE	FALSE	73.0%	76.9%	74.5%
92_204_508	reaction-specific RPAIR  graph	main	unit	degree	FALSE	FALSE	77.7%	71.7%	74.1%
91_203_507	reaction-specific RPAIR  graph	main	unit	degree	FALSE	TRUE	77.2%	71.9%	74.0%
33_145_449	ReactionGraph	all	unit	degree	TRUE	TRUE	74.6%	72.2%	72.5%
34_146_450	ReactionGraph	all	unit	degree	TRUE	FALSE	74.6%	72.2%	72.5%
100_212_516	reaction-specific RPAIR  graph	main	RPAIR class-specific	degree	FALSE	FALSE	76.2%	69.8%	72.4%
99_211_515	reaction-specific RPAIR  graph	main	RPAIR class-specific	degree	FALSE	TRUE	75.7%	70.0%	72.3%
106_218_522	reaction-specific RPAIR  graph	main-trans	unit	degree	TRUE	FALSE	74.7%	71.6%	72.2%
71_183_487	RPAIR graph	all	unit	unit	FALSE	TRUE	73.6%	72.4%	71.8%
55_167_471	RPAIR graph	main-trans	unit	unit	FALSE	TRUE	73.6%	71.9%	71.7%
37_149_453	RPAIR graph	main	unit	unit	TRUE	TRUE	74.0%	71.6%	71.6%
39_151_455	RPAIR graph	main	unit	unit	FALSE	TRUE	74.0%	71.6%	71.6%
45_157_461	RPAIR graph	main	RPAIR class-specific	unit	TRUE	TRUE	74.0%	71.6%	71.6%
47_159_463	RPAIR graph	main	RPAIR class-specific	unit	FALSE	TRUE	74.0%	71.6%	71.6%
109_221_525	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	unit	TRUE	TRUE	80.2%	66.2%	71.4%
111_223_527	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	unit	FALSE	TRUE	80.2%	66.2%	71.4%
125_237_541	reaction-specific RPAIR  graph	all	RPAIR class-specific	unit	TRUE	TRUE	80.2%	66.2%	71.4%
127_239_543	reaction-specific RPAIR  graph	all	RPAIR class-specific	unit	FALSE	TRUE	80.2%	66.2%	71.4%
90_202_506	reaction-specific RPAIR  graph	main	unit	degree	TRUE	FALSE	74.8%	69.0%	71.3%
69_181_485	RPAIR graph	all	unit	unit	TRUE	TRUE	73.1%	71.8%	71.3%
89_201_505	reaction-specific RPAIR  graph	main	unit	degree	TRUE	TRUE	74.3%	69.2%	71.2%
53_165_469	RPAIR graph	main-trans	unit	unit	TRUE	TRUE	72.7%	71.6%	71.1%
98_210_514	reaction-specific RPAIR  graph	main	RPAIR class-specific	degree	TRUE	FALSE	74.8%	68.6%	71.1%
97_209_513	reaction-specific RPAIR  graph	main	RPAIR class-specific	degree	TRUE	TRUE	74.3%	68.7%	70.9%
35_147_451	ReactionGraph	all	unit	degree	FALSE	TRUE	71.2%	69.9%	69.5%
36_148_452	ReactionGraph	all	unit	degree	FALSE	FALSE	71.2%	69.9%	69.5%
85_197_501	reaction-specific RPAIR  graph	main	unit	unit	TRUE	TRUE	74.0%	63.0%	66.9%
87_199_503	reaction-specific RPAIR  graph	main	unit	unit	FALSE	TRUE	74.0%	63.0%	66.9%
93_205_509	reaction-specific RPAIR  graph	main	RPAIR class-specific	unit	TRUE	TRUE	74.0%	63.0%	66.9%
95_207_511	reaction-specific RPAIR  graph	main	RPAIR class-specific	unit	FALSE	TRUE	74.0%	63.0%	66.9%
62_174_478	RPAIR graph	main-trans	RPAIR class-specific	unit	TRUE	FALSE	70.4%	63.2%	65.5%
64_176_480	RPAIR graph	main-trans	RPAIR class-specific	unit	FALSE	FALSE	70.4%	63.2%	65.5%
78_190_494	RPAIR graph	all	RPAIR class-specific	unit	TRUE	FALSE	70.4%	62.1%	64.7%
80_192_496	RPAIR graph	all	RPAIR class-specific	unit	FALSE	FALSE	70.4%	62.0%	64.7%
101_213_517	reaction-specific RPAIR  graph	main-trans	unit	unit	TRUE	TRUE	69.8%	61.6%	64.3%
103_215_519	reaction-specific RPAIR  graph	main-trans	unit	unit	FALSE	TRUE	69.8%	61.6%	64.3%
117_229_533	reaction-specific RPAIR  graph	all	unit	unit	TRUE	TRUE	69.2%	62.0%	64.2%
119_231_535	reaction-specific RPAIR  graph	all	unit	unit	FALSE	TRUE	69.2%	62.0%	64.2%
38_150_454	RPAIR graph	main	unit	unit	TRUE	FALSE	65.7%	60.7%	62.2%
40_152_456	RPAIR graph	main	unit	unit	FALSE	FALSE	65.7%	60.7%	62.2%
46_158_462	RPAIR graph	main	RPAIR class-specific	unit	TRUE	FALSE	65.7%	60.7%	62.2%
48_160_464	RPAIR graph	main	RPAIR class-specific	unit	FALSE	FALSE	65.7%	60.7%	62.2%
54_166_470	RPAIR graph	main-trans	unit	unit	TRUE	FALSE	65.0%	60.0%	61.3%
56_168_472	RPAIR graph	main-trans	unit	unit	FALSE	FALSE	65.0%	60.0%	61.3%
72_184_488	RPAIR graph	all	unit	unit	FALSE	FALSE	63.2%	57.9%	59.0%
70_182_486	RPAIR graph	all	unit	unit	TRUE	FALSE	63.0%	57.9%	58.9%
110_222_526	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	unit	TRUE	FALSE	69.5%	51.0%	57.3%
112_224_528	reaction-specific RPAIR  graph	main-trans	RPAIR class-specific	unit	FALSE	FALSE	69.5%	51.0%	57.3%
126_238_542	reaction-specific RPAIR  graph	all	RPAIR class-specific	unit	TRUE	FALSE	69.5%	51.0%	57.3%
128_240_544	reaction-specific RPAIR  graph	all	RPAIR class-specific	unit	FALSE	FALSE	69.5%	51.0%	57.3%
29_141_445	ReactionGraph	all	unit	unit	TRUE	TRUE	61.4%	55.6%	56.9%
86_198_502	reaction-specific RPAIR  graph	main	unit	unit	TRUE	FALSE	65.7%	51.2%	56.6%
88_200_504	reaction-specific RPAIR  graph	main	unit	unit	FALSE	FALSE	65.7%	51.2%	56.6%
94_206_510	reaction-specific RPAIR  graph	main	RPAIR class-specific	unit	TRUE	FALSE	65.7%	51.2%	56.6%
96_208_512	reaction-specific RPAIR  graph	main	RPAIR class-specific	unit	FALSE	FALSE	65.7%	51.2%	56.6%
102_214_518	reaction-specific RPAIR  graph	main-trans	unit	unit	TRUE	FALSE	63.4%	51.8%	55.8%
104_216_520	reaction-specific RPAIR  graph	main-trans	unit	unit	FALSE	FALSE	63.4%	51.8%	55.8%
31_143_447	ReactionGraph	all	unit	unit	FALSE	TRUE	59.9%	51.8%	54.0%
118_230_534	reaction-specific RPAIR  graph	all	unit	unit	TRUE	FALSE	59.7%	47.7%	51.7%
120_232_536	reaction-specific RPAIR  graph	all	unit	unit	FALSE	FALSE	59.7%	47.7%	51.7%
30_142_446	ReactionGraph	all	unit	unit	TRUE	FALSE	43.5%	8.6%	15.7%
32_144_448	ReactionGraph	all	unit	unit	FALSE	FALSE	45.1%	8.0%	15.3%