# CoNet vs. 1.0b4 compiled for Cytoscape 3.X parameter values # Time of export: Thu Feb 27 15:17:24 CET 2014 method==ensemble input==arctic_soils.txt randroutine==edgeScores randscorefile==conetBootstraps.txt matrixtype==abundance thresholdguessing==edgeNumber guessingparam==1000.0 resamplemethod==bootstrap nulldistribfile==conetPermutations.txt ensemblemethods==correl_pearson/correl_spearman/sim_mutInfo/dist_bray/dist_kullbackleibler stand==col_norm minetdisc==equalfreq lineage_separator==-- edgethreshold==0.05 nantreatment==none nantreatmentparam==1 networkmergestrategy==union mi_implementation==jsl iterations==100 inputformat==biomtable delimiter==tab features==arctic_soils_features.txt multicorr==benjaminihochberg pvaluemerge==brown multigraph==true higherleveltaxa==true transposefeatures==true matchfeaturesamples==true topbottom==true no_rserve==true keepfilteredrows==true filter==noinclusivetaxalinks/confidence_boot/row_minocc/rand filterparameter==20.0