References, resources and related tools

CoNet Manual References

  1. Agrawal, R., Imielinski, T. & Swami, A. "Mining Association Rules between Sets of Items in Large Databases" in ACM SIGMOD Conference (eds. Buneman, P. & Jajodia, S.) 207-216 (ACM Press, 1993).
  2. Aitchison, J., "A Concise Guide to Compositional Data Analysis" in CDA Workshop Girona (2003).
  3. Brown, M.B., "A Method for Combining Non-Independent, One-Sided Tests of Significance." Biometrics 31, 987-992 (1975).
  4. Costello, E.K. et al. "Bacterial Community Variation in Human Body Habitats Across Space and Time." Science 326, 1694-1697 (2009).
  5. Ellson, J., Gansner, E.R., Koutsofios, E., North, S.C. & Woodhull, G. in GRAPH DRAWING SOFTWARE (Springer-Verlag, 2003).
  6. Faith J.J., et al. "Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles." PLoS Biol, 5:54-66 (2007).
  7. Hu, Z. et al. "VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology." Nucleic Acids Research 37, W115-W121 (2009).
  8. Lallich S., Teytaud O., & Prudhomme E. "Statistical inference and data mining: false discoveries control." 17th Compstat Symposium of the IASC:325-336 (2006).
  9. Legendre, P. & Legendre, L. "Numerical ecology" (Elsevier Science B.V., Amsterdam, 1983).
  10. Margolin, A.A. et al. "ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context." BMC Bioinformatics, 1-15 (2006)
  11. Meyer, P.E., Lafitte, F. & Bontempi, G. "minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information." BMC Bioinformatics, 1-10 (2009)
  12. Meyer P.E., et al. "Information-theoretic inference of large transcriptional regulatory networks." EUROSIP J. Bioinform. Syst. Biol. 79879 (2007).

CoNet Resources

Below, resources are listed of which CoNet makes use.

Links to related tools

Tools are listed in alphabetical order by their name.