Information
Structure of the summer school
The summer school consists of research talk and teaching (hands-on) sessions. Each day
is focused on a particular topic, which is introduced by an overview talk on the morning
of that day. The afternoons are dedicated to hands-on sessions on the computer.
Tutorials:
- Monday: Generalised Lotka-Volterra (solutions)
- Tuesday: Network inference with CoNet and SPIEC-EASI
- Wednesday: Microbiome R package
Preparation for the participants
The summer school will take place in a class-room style lecture hall. Participants are required to
bring their own laptop. To be able to follow the hands-on sessions, participants should
install the following software:
- R with packages microbiome, seqtime, phyloseq, SpiecEasi, igraph and deSolve
For an introduction to R, please have a look here - Cytoscape with plugins CoNet and CytoCluster
Check out the App manager in Cytoscape for convenient installation of plugins - Optional: Create an account in Qiita
- Optional: Install the biom converter
