Tutorial files
Original data
Original data were downloaded from QIIME (data identifier: Chu_arctic_soils) and renamed.
- QIIME biom file
- QIIME mapping file (sample metadata)
Processed data
Processed data were obtained by converting the biom file into an OTU table ("arctic_soils.txt")
using the biom converter tool and then
by further reformatting and filtering the OTU table ("arctic_soils_filtered.txt").
Sample metadata were selected from the mapping file using Excel.
- OTU table with lineages (after conversion from biom file): Input for CoNet
- OTU table without lineages and all OTUs with less than 20 occurrences discarded: Input for LSA, MENA and SparCC
- filtered sample metadata: Input for CoNet
Intermediate results
In this section, intermediate results for SparCC and CoNet, which take long to compute,
can be downloaded. The CoNet files take ca. 10 minutes to compute each,
SparCC bootstraps take ca. 10h.
- 100 correlation matrices generated from bootstraps for SparCC
- 100 permutations for CoNet
- 100 bootstraps for CoNet
Scripts and settings
The paths to the input and output files have to be adapted.